I read it as the OP planning on riding up Yummy and down the downhill part of CN back to Lost Lake/Zappa Trails. This is quite a short ride that is just another way of adding fun mileage to the Zappa network and by no means an epic. I'd guess the climb is a stiff(ish) 1.5km climb and then down CN maybe 2km of moderately technical terrain.
I think wheelsize is irrelevant. I'd take whatever of those two bikes is more "all mountain" and you are comfortable climbing and descending with. It's a really great combo that I believe was designed for people that don't want the gruel of CN, but want the best part of the DH, but also more than just the Zappa trails for a couple hour ride.
I agree that the reward for effort of CN is pretty low as a complete ride and prefer doing KMTM to first 1/4 of CN, then down YL and then Sea2Sky to Zappa trails. Actually would be good to then climb YN and then descent the downhill piece of CN. Now you've got me wanting to put that together…
That all said, why would you still be riding 26"? (wait… I still have one too…). Although my 29er all mountain bike excels in much of what Whistler has to offer outside the park.