Like I said, a basic understanding of statistics and cognitive psychology will help us through innumerable land mines like false balance.
The film is not, and organizations listed in your link like the National Vaccine Information Center are not an anti-vaccine organization.
As also explained in film is how the vaccination debate has been politicized into an either or proposition, and includes interviews with pro-vaccine pediatricians who don't accept the current model of mass vaccination.
Take the particularly egregious case of Gardasil, which was supposed to undergo a 3 year trial and, although showing adverse outcomes during the clinical period got fast-tracked approval (no doubt the revolving door of employment between drug manufacturers and positions at the FDA playing a role) after only 15 months of testing. After approval clinical trials were immediately discontinued.
Nowhere in the film does it suggest we stop vaccinating. Just that a more nuanced, scientifically vetted approach should be adopted to protect those individuals who are genetically or otherwise predisposed to bad outcomes from the scattergun approach to vaccinating children.
By law people are unable to sue vaccine mgfs. A tax was added to each shot to create a fund for those seeking damages. Since inception it's paid out over $2,000,000,000.00.
Appears the program could use some tweaking.
Freedom of contract. We sell them guns that kill them; they sell us drugs that kill us.